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Appendix 1 - Reference code tables
Origin code
SMP |
Stock Monitoring Programme - Market Sampling |
SOP |
Scientific Observer Programme - Catch Sampling |
TAN |
Tangaroa |
KAH |
Kaharoa |
AEX |
Amaltal Explorer |
COR |
Cordella |
GIL |
Giljanes |
WIL |
Will Watch |
JCO |
James Cook |
WES |
Wesermunde |
ARR |
Arrow |
REC |
Recreational |
MIS |
Miscellaneous e.g., mixed landing, or no length frequency |
AKA |
Akagi Maru |
BFN |
Bluefin - MAF Auckland Vessel |
SHI |
Shinkai Maru |
RIG |
Rig catch sampling (gill-netting and trawl surveys) |
ELE |
Elephantfish catch sampling |
| WJS |
W.J.Scott |
BUC |
Otago Buccaneer |
AKS |
Akebono Maru No. 3 |
AKE |
Akebono Maru No. 73 | Reader code
0 |
Agreed Age |
1 |
David A. Banks |
2 |
David O. Fisher |
3 |
Adam D. Langley |
4 |
Kerri E. Lister |
5 |
Kevin A. Mackay |
6 |
Heidi Getrost |
7 |
Elizabeth Halsey |
8 |
Colin Docherty |
9 |
Mike Coakley |
10 |
Peter Horn |
11 |
C. L. Newport |
12 |
Claire L. Gabriel |
13 |
Gerard Worsfold |
14 |
Kevin J. Sullivan |
15 |
Kimon George |
16 |
Ian Rosemergy |
17 |
Jonathan Ingerson |
18 |
Peter Marriott |
19 |
Darren Stevens |
20 |
Larry Paul |
21 |
Bruce Hartill |
22 |
Cameron Walsh |
23 |
Ken Kawiti |
24 |
Helena Cadenhead |
25 |
Bill Trusewich |
26 |
Guido I. Kucerans |
27 |
Dave J. Gilbert |
28 |
A. J Taylor |
29 |
C.Smith |
30 |
D. J Hollaway |
31 |
Pat. Swanson |
32 |
N. J Millar |
33 |
K. A Fisher |
34 |
Brent A Wood |
35 |
B. L Bycroft |
36 |
Ian F West |
37 |
CLC |
38 |
BJW |
39 |
Colin Sutton |
40 |
Greg Meikle |
41 |
Jim Drury |
42 |
Victor Cauty |
43 |
Derrick Parkinson |
44 |
Simon Carter |
45 |
Mark Morrison |
46 |
Helen Johnson |
47 |
Elwyn Green |
48 |
Andy Hay |
49 |
Andrea Price |
50 |
Dominic McCarthy |
51 |
Tracey Osborne |
52 |
Diederik Meenken |
53 |
Paul Creswell |
54 |
Eunice Warren |
55 |
Nick Davies |
56 |
Malcolm Haddon |
57 |
Sheryl Mutton |
58 |
Tim Lowe |
59 |
Jeremy McKenzie |
60 |
Dave Allen |
61 |
Paul Fraser |
62 |
Eddie Sides |
63 |
Carmen Gray |
64 |
Stuart Hanchet |
65 |
Evan Skipworth |
66 |
Andrew Hamilton |
67 |
John Taunton-Clark |
68 |
Tessa Fagan |
69 |
Glenn Mackay |
70 |
Mike Beentjes |
71 |
Don Jellyman |
72 |
Ben Chisnall |
73 |
Jill Parkyn |
74 |
Glen Carbines |
75 |
Derek Kater |
76 |
Matthew Smith |
77 |
Caoimhghin O Maolagain |
78 |
Gavin James |
79 |
ERM |
80 |
REM |
81 |
JF |
82 |
T P |
83 |
Robert Bedford |
84 |
SJH |
85 |
Adrian Colman |
86 |
Malcolm Francis |
87 |
Arthur Hore |
88 |
Nathan Singleton |
89 |
Shaun Henderson |
91 |
Niki Alcock |
92 |
Bruce Dudley |
93 |
Crispin Middleton |
99 |
Not Known |
100 |
Di Tracey |
101 |
Peter Horn and Di Tracey |
Ageing method code
1 |
Break, polish, bake and count rings from the centre, looking at 2 halves of the one otolith.(used by stock monitoring for the 1989 seasons otoliths) |
2 |
Break, polish, burn and count rings from the centre, looking at one half of the otolith. A 2 mm diameter scale was used to help locate the first ring. (used by G. Worsfold, C. Gabriel and K. Sullivan for the pilot phase .ie., 1988 otolith readings.) |
3 |
Break, polish, burn or bake and count rings using a graticle as a guide to the 1st 3 years (1 year at 2mm, 2yrs at 4mm & 3 years at 5mm) looking at one half of the otolith. (Used for sub-samples of 1988 and 1990 seasons otoliths.) |
4 |
Otolith read whole, immersed in water, paraffin oil or like |
5 |
Whole, bleached vertebral centra were obliquely illuminated with a fibre optic light source. By moving the light source above and below the rim of the articulating face, it was possible to quickly view the hyperminearlised vertebral bands with both transmitted and reflected light. The theoretical birthday was defined as 1 September. The time of band deposition approximately coincides with the theoretical birthday. Therefore, the age assigned to each rig was the band count minus one for the birth band, plus the fraction of the year elapsed between 1 September and the sampling date. The mean of two age estimates (made by two readers) was taken as the final age estimate. |
6 |
Break and Burn |
7 |
Whole otolith baked, embedded in epoxy resin, cut transversely through nucleus with diamond tip blade. Read using binocular microscope to count rings from one or both sides of a prepared otolith. |
8 |
Ageing material bleached, embedded in epoxy resin, sectioned, attached to a slide and polished. |
10 |
Otolith weight in grams to 3 decimal places |
11 |
Thin section, as in Tracey & Horn 1999 Background & review of ageing ORH |
12 |
Modified Ageing Methodology for Juvenile Hoki Age 1 - 2. As of December 2000. Result and error attributes in the t_reading table: |
Attribute |
Value Stored |
result1 |
Age |
result2 |
Radius to Zone 1 |
result3 |
Radius to Zone 2 |
result6 |
Radius to otolith edge |
error3 |
Overall clarity (1-3), where 1 = best |
error5 |
split/multiple 2nd zone (1 = true, 0 = false) |
Ageing method code [cont" ]
13 |
Modified Ageing Methodology for Juvenile Hoki Age 3. As of December 2000. Result and error attributes in the t_reading table: |
Attribute |
Value Stored |
result1 |
Age |
result2 |
Radius to Zone 1 |
result3 |
Radius to Zone 2 |
result4 |
Radius to Zone 3 |
result5 |
Radius to edge of the juvenile zone |
result6 |
Radius to otolith edge |
error1 |
Clarity of Zone 1 (1-4), where 1 = best, 4 = unreadable |
error2 |
Clarity of juvenile zone 1 (1-4), where 1 = best, 4 = unreadable |
error4 |
Split/multiple 1st zone (1=true, 0=false) |
error5 |
split/multiple 2nd zone (1 = true, 0 = false) |
error6 |
split/multiple 3nd zone (1 = true, 0 = false) |
14 |
Modified Ageing Methodology for Hoki. As of December 2000. Result and error attributes in the t_reading table: |
Attribute |
Value Stored |
result1 |
Age |
result2 |
Radius to Zone 1 |
result3 |
Radius to Zone 2 |
result4 |
Radius to Zone 3 |
result5 |
Radius to edge of the juvenile zone |
error1 |
Clarity of Zone 1 (1-3), where 1 = best |
error2 |
Clarity of juvenile zone 1 (1-4), where 1 = best, 4 = unreadable |
error7 |
Clarity for Zones 1 to 3 combined (1-3), where 1=best |
Ageing material code
1 |
Otolith |
2 |
Scales |
3 |
Spines |
4 |
Vertebrae |
5 |
Teeth |
6 |
Statolith (cephalopod) |
| 7 |
Eye lenses |
| 8 |
Caudal thorns (skates) |
Gonad Stage Codes
| 1. |
IMMATURE/RESTING Ovary translucent or pink, small with no eggs visable. Can occur in both small and large fish. |
| 2. |
MATURING Eggs visible, opaque coloured, but not hyaline (clear). Ovaries can get quite large and solid in this stage. Colour will vary between species, but maturing ovaries are generally creamy white to orange. If held up to the light or cut, a small ovary thought initially to be Stage 1 may show some developing eggs: it is then to be classed as Stage 2. |
| 3. |
RIPENING Ovary large and firm Clear eggs are present (more than just one or two). The ovary can appear quite mottled with clear eggs interspersed with the opaque maturing eggs. |
| 4. |
RUNNING RIPE Ovary large, thin walled and fragile. Large clear eggs flow out freely, or are obvious in large numbers when the ovary is cut. |
| 5. |
SPENT Ovary flaccid and bloody, size much reduced from Stage 4. Some residual large clear or opaque eggs may still be present. |
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